Behind the vial series

Understanding manual peptide vial filling

Krysia

The drawing above illustrates the laminar flow workstation setup seen in the accompanying video. This is the environment where the peptide solution is prepared and the vials are manually filled.

In this post I describe the method and equipment used, while the following post shows the actual factory footage of the process in action.

In the video, the workflow appears to move between two laminar flow workstations. One workstation is used for solution preparation and sterile filtration, while the second workstation is used for manual filling of the vials under sterile airflow.

The diagram therefore represents a general illustration of the sterile workstation environment used for these stages, rather than an exact floor plan of the facility.

Below is the process shown in the video.

1. Preparation of the peptide solution

The video begins with the peptide solution being prepared inside a laminar flow hood.

A container holding the solution is positioned inside the sterile workspace. This container holds the final liquid formulation that will later be filtered and dispensed into vials.

The solution typically contains:

the raw peptide itself (API)

sterile water or buffer

added stabilisers and excipients to support the formulation during lyophilisation

Preparing the solution inside the hood helps reduce exposure to airborne contamination.

2. Sterile filtration setup

The next step shown is the preparation of the sterile filtration system.

In the video you can see a yellow disc filter still inside sterile packaging.

This is a 0.22 micron sterile filter, which is widely used for sterilising liquid formulations.

The filter removes:

bacteria

microbial contaminants

particulate matter

This filtration stage is one of the final sterility barriers before filling begins.

3. Assembly of the filtration system

The operator removes the filter from its sterile packaging and connects it to the solution container.

The filtration system consists of:

the solution container

the sterile filter

tubing leading to a receiving container

The solution must pass through the 0.22 micron membrane before it reaches the final container used for filling.

4. Sterile filtration of the solution

The peptide solution is then filtered through the 0.22 micron membrane.

The filtered solution flows into a clean receiving container positioned beneath the filter assembly.

At this stage the solution has passed through the sterile barrier and is ready to be transferred to the filling system.

5.Labelling the container

After filtration the container is marked with a pen.

This appears to be a simple visual reference mark used during the filling process.

6.Transfer to the filling workstation

The video then moves to a second laminar flow hood.

This second workstation contains the equipment used for manual filling.

Visible in this hood are:

a stainless steel work surface

a peristaltic pump

sterile tubing

an alcohol burner

This hood is used specifically for the open vial filling stage.

7.Laminar airflow protection

Both workstations operate as laminar flow cabinets.

A laminar flow hood pushes HEPA filtered air downward across the work surface in a smooth, uniform flow.

This continuous stream of clean air prevents airborne particles such as:

dust

microbes

environmental contaminants

from settling onto exposed containers or open vials.

This controlled airflow is essential during the stage when the vials are open.

8.Flame sterilisation

Next to the workstation a small alcohol burner is visible.

Before handling the solution container, the operator briefly passes the bottle neck near the flame.

This technique is known as flame sterilisation and is commonly used in microbiology and aseptic handling.

The heat helps destroy microorganisms that may be present on exposed surfaces such as:

bottle openings

metal tools

tweezers

This helps maintain sterile conditions while manipulating containers inside the hood.

9. Peristaltic pump setup

The green machine visible in the footage is a peristaltic pump.

Peristaltic pumps move liquid through flexible tubing by compressing the tubing with rotating rollers.

This design offers an important advantage:

the liquid never contacts the pump mechanism itself.

Instead, the solution only touches the sterile tubing.

Because the tubing can be single use and sterile, this design greatly reduces contamination risk.

10. Connecting the sterile tubing

Clear sterile tubing is attached to the pump and connected to the solution container.

The tubing forms a sterile pathway that carries the peptide solution from the container to the filling outlet.

Before filling begins, the system must be primed.

11. Priming the tubing

Priming removes air bubbles from the tubing system.

Air inside the tubing could lead to:

incorrect fill volumes

inconsistent dosing

foaming in the vials

To prevent this, the operator runs solution through the tubing until the flow becomes stable.

This ensures the entire fluid path contains liquid before filling begins.

12.Transfer Cabinet / Pass-Through Box

The video briefly shows a transfer cabinet (pass-through box) containing wrapped trays of vials, tubing sets, and pipette equipment. These cabinets are used to move sterile materials into the cleanroom while minimizing contamination risk. Materials are placed into the cabinet from outside the cleanroom and then retrieved from the sterile side before work begins.

13.Preparing the vial tray

A stainless steel tray containing many empty glass vials arranged in a grid is placed inside the hood.

These vials are typically made from Type I borosilicate glass, which is commonly used because it is:

chemically inert

resistant to thermal shock

compatible with pharmaceutical formulations

The tray keeps the vials stable and organised during the manual filling process.

14.Manual filling of the vials

Once the tubing has been primed and the system is running smoothly, manual filling begins.

The dispensing tube is positioned above the tray of vials while the peristaltic pump controls the flow of liquid.

In this particular setup:

the pump controls the volume delivered

the operator controls the position of the dispensing tube

The operator moves the tubing across rows of vials so that each vial receives the programmed volume of solution.

15.Monitoring fill consistency

During filling the operator monitors the process visually.

They may check:

the liquid level in the vials

the stability of the flow

the overall consistency of the filling process

In large automated production lines this step is often handled by camera based inspection systems, but in smaller batch production it is typically checked visually by the operator.

Manual filling is often dismissed as less precise, but accuracy depends less on whether the process is manual or automated in theory, and more on pump calibration, line setup, operator technique, and in process checks. In this setup, the operator guides the tubing by hand, but the peristaltic pump regulates the volume, allowing a consistent amount of solution to be dispensed into each vial.

Although the stoppering step itself is not shown, later footage shows the vials to already have stoppers partially inserted. These are not fully seated. The stoppers sit loosely in the vial neck to protect the opening while still allowing vapour to escape during freeze drying before final sealing. They are shown being marked with a pen, likely as a temporary identifier or reference during handling. The tray is then moved on toward the next stage which is the lyophilisation stage.

The next post shows the video walkthrough of the entire process, from filtration and pump setup through to the manual filling of the vial trays.

Behind the vial

Comments